Progress update! Work continues, now that rails are out ships are once again being brought up to date, albeit slowly.
I've refit my new gunship with the seamless rail features. This ship is quite wonderful now, and I am much happier with her new turrets over the ones I slapped together. They're not great and they suck at punching through hardened hull but they add a little extra DPS and the four vertical missile launchers are the real beauty on this ship anyway. I'm going to have to destroy one of these ships to see how it handles the collisions as a lot of the docked parts are intertwined now and not just a big cube sitting in it. Most of the shields that were docked have now been moved to the main ship but the docked launchers do have some of their own shields.
[DOUBLEPOST=1431578561,1431575712][/DOUBLEPOST]I've also finally sorted out the issues with my Longsword.
These are all the phantom connections to the core. Any logic block or computer that is connected shows up in the weapons tab but cannot be accessed. The ship in this state is below my standards so even though I've been wanting to release an update for this ship I have been unable to.
What I had to do to solve this error was copy the entire ship, 84x49x36 containing more block types than one can hold in their inventory. Once I stripped out easy to replace blocks that would take up to much space in my inventory I copied it, pasted it onto a new core off center so the phantom blocks would be in empty space and therefore not connect. Then I had to copy the ship a second time and paste it onto a new core with the core in the proper position.