Earlier today I tried to enter one of my docked ships after logging into the game, and I kept clipping through it. I was unable to interact with the ship at all. I restarted the game, but the problem remained. I then used the repair option in the launcher, and when I got into the game I was able to use the ship normally for the remainder of the gaming session (about an hour of play.)
I returned to the game later in the evening and tried to enter the ship that I had once again docked (at the same location.) Once again, I could only clip through the ship as if it were a hologram. Rather than repair, I tried another tact - I used Admin Warp to exit the sector to another base where I had ships. I found I was able to enter those ships normally. I then Admin Warped back to the previous sector to see if anything had changed. Well, it had...the ship was gone altogether.
I did a /search for the ship and no coordinates came back. Okay, NOW I exited the game and did a file repair. When I returned to the game, the ship was still gone.
[DOUBLEPOST=1421138549,1421137610][/DOUBLEPOST]After using admin commands to restore the ship to the game, I remembered one odd quirk of the ship: it has a ghost block that I can't seem to remove. A weapon computer that I had put into the ship and later removed remains on the weapons list. The empty spot where it once sat even shows an outline if I link it to an existing weapon. I tried placing a piece of hull in the location, but it didn't change anything within the weapon list.
[DOUBLEPOST=1421139380][/DOUBLEPOST]As a further update, having created the new ship, I flew it from the location where the previous one was docked back to my home base - where the ship would usually be docked and where it was built. Upon arrival, I found the original ship docked in its usual berth, pretending like it had been there all along. I can't help but wonder what further mischief awaits, as I now have two ships with identical names (where I should have gotten an error because that ship name already existed when I spawned the new version.)
The "original" ship, which I found docked where it shouldn't be even had the modifications I had made to it in my last play session, even though I hadn't saved them to the catalog. So, this ship mysteriously vanished and re-appeared in a completely different sector with everything intact. I'm considering renaming it the "Event Horizon."