Yes, there is a hack that allows anyone to remove modules from your ship, faction home, anything, shops even. If you are in the ship they can take it apart, your faction home can be shot up and destroyed, ships undocked...etc Permissions/protections mean nothing. In the same way you can tell the server what blocks you have and it then assumes you actually do have those blocks.
Here is a video that was posted http://youtu.be/GduOvfGOY-s?t=3m47s
The base being destroyed is mine, it was a faction home, and all areas around there had faction blocks. I\'m not angry about the base.But I am pretty dissipointed that the same problem with minecraft is repeated with starmade, where clients can tell the server what items they have and what permissions they have with no protection against that.