Server crashes after start

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    After the first update today, the server was working, i then closed the server and restarted it later before updating, and now it automatically shuts down. According to the logs:

    [21-Jul-2013 17:35:45] STDERR: [ERR] java.lang.NullPointerException
    [21-Jul-2013 17:35:45] STDERR: [ERR] at lY.fromTagStructure(SourceFile:827)
    [21-Jul-2013 17:35:45] STDERR: [ERR] at lY.(SourceFile:108)
    [21-Jul-2013 17:35:45] STDERR: [ERR] at ll.(SourceFile:66)
    [21-Jul-2013 17:35:45] STDERR: [ERR] at org.schema.game.server.controller.GameServerController.initializeServerState(SourceFile:636)
    [21-Jul-2013 17:35:45] STDERR: [ERR] at org.schema.schine.network.server.ServerController.startServerAndListen(SourceFile:335)
    [21-Jul-2013 17:35:45] STDERR: [ERR] at jo.run(SourceFile:841)
    [21-Jul-2013 17:35:45] STDERR: [ERR] at java.lang.Thread.run(Unknown Source)
    [21-Jul-2013 17:35:45] STDERR: [ERR] WARNING: USING EMERGENCY SHUTDOWN HOOK

    In the 0.0938: Meta Items & new factories update, it was said that schema removed the emergency shutdown hooks, so why is this ocurring to the server?

    I can't seem to do anything to fix it either.

    Any ideas?
     
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    Basically my folder \'server-database\' is corrupted, or something, as this is preventing the server from running.

    Is there anyway of recovering specific entities from this folder, or restoring the folder so it can work again?
     
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    The file FACTIONS.fac is the corrupted/broken file, without it the server runs, however our ships don\'t show up???

    i have no idea why, or how to recover the ships.

    Schema what makes up a ship in the game? what am i missing if the entity files are there, the catalogue file is ther and the index folder is there?