I would have to say no, Due to... well, Imagine a rather annoying Player on a server who drops swarms of Drones around spawn and such. Now imagine those drones were Invisible 99% of the time. If the drones were given weapons with High reload they would be impossible to track. And since AI is instant, Cloak and Jammers would go back up almost immediately.
There's also an Issue with that with Jammers, the Target Icon is removed. Server Admins need to select it to Delete Ships that are causing Problems. If a Player was in the ship, an Admin could just teleport them away, but a AI with Jammer would be untouchable. And since Single-player is just a Local Server, it couldn't be added to just one and not the other.
-Opinion Below-
Another concern is the upcoming NPC fleet system-thingie, where you could have up to 5 NPCs following you in ships. I dunno, Things like Jammers and Cloakers (And by Extension, Passive effects) Should be a Player-only option. It would mean that AI instead of Players, but as a Substitute incase you cant find players. AI Bringing Extra Damage, Players doing More tactical things.